Training materials
Resource type: hands-on tutorial
and Contributors: Dr. Simon Andrews or Fotis E. Psomopoulos or Mikko Rautiainen or Ms. Yo Yehudi or Wendi Bacon or Wolfgang Maier or bioinformatics.ca
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Removing the effects of the cell cycle
• beginner10x Single Cell -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
hands-on tutorial
Somatic Variant Discovery from WES Data Using Control-FREEC
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication