Training materials
Contributors: Dr. Roy Ruddle or Maria Doyle or Marius van den Beek or Michael Ball or Pavel Dvorak or Ph.D. or Saskia Hiltemann or Vicky Schneider or cambiotraining or carpentries-incubator
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
carpentries-incubator/R-ecology-lesson-intermediate
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carpentries-incubator/gitlab-novice
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cambiotraining/corestats
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cambiotraining/python-data-science
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carpentries-incubator/fair-for-leaders
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carpentries-incubator/python_packaging