Training materials
Scientific topics: Transcriptome
and Contributors: Dr. Jim Procter or Erwan Corre or Helena Rasche or SIB Swiss Institute of Bioinformatics or Thomas Denecker
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
sib-swiss/spatial-transcriptomics-training
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thomasdenecker/FAIR_Bioinfo
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sib-swiss/RNAseq-introduction-training
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sib-swiss/single-cell-training
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hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Combining single cell datasets after pre-processing
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
De novo transcriptome assembly, annotation, and differential expression analysis
• beginnerTranscriptomics
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