Training materials
Contributors: Dr. A.J. Pretorius or Hadley Wickham or Marek Vrbacky or Marius van den Beek or Michael Krone or Mr. William Edward Hill or PhD BSc FSB or Prof. Tom Freeman or Saskia Hiltemann
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hadley/r-pkgs
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hadley/ggplot2-book
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hadley/mastering-shiny
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hadley/adv-r
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hadley/r4ds
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hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs