Training materials
Contributors: Dave Clements or David Bouyssié or Eija Korpelainen or John Chilton or Mehmet Tekman or Robert Andrews or Vitor Sousa or Yvonne Kallberg
-
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
ekorpela/cloud-vm-workshop
-
video
RDMbites | Analysis Organisation
-
video
RDMbites | RNAseq data submission: ArrayExpress
-
video
RDMbites | Metadata: where to find published ontologies
-
video
RDMbites | High-throughput sequencing data repositories
-
video
RDMbites | Making code available in a repository
-
video
RDMbites | Package and environment management systems
-
video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks