Training materials
Contributors: Data Carpentry or Dr. Martin Graham or Emma Leith or Manimozhiyan Arumugam or Michael Ball or Niclas Jareborg or Pavankumar Videm or Prof. Richard Baldock or Vicky Schneider
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
datacarpentry/rr-version-control
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datacarpentry/rr-literate-programming
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datacarpentry/rr-automation
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datacarpentry/cloud-genomics
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datacarpentry/organization-genomics