Training materials
Contributors: Daniel Sobral or Gildas Le Corguillé or James Johnson or Mark Beaumont or Matthias Fahrner or Mehmet Tekman or Mikko Rautiainen or UC Davis Bioinformatics Core Training Page
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
ucdavis-bioinformatics-training/2021-August-Iso-Seq
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ucdavis-bioinformatics-training/2021-May-Microbial-Community-Analysis
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ucdavis-bioinformatics-training/2023-September-Introduction-to-the-Command-Line-for-Bioinformatics
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ucdavis-bioinformatics-training/2023-July-Introduction-To-Python-For-Bioinformatics
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ucdavis-bioinformatics-training/2023-June-Introduction-to-R-for-Bioinformatics
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ucdavis-bioinformatics-training/2022-December-Spatial-Transcriptomics
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ucdavis-bioinformatics-training/2022-July-Advanced-Topics-in-Single-Cell-RNA-Seq-ATAC
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ucdavis-bioinformatics-training/2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ