Training materials
Contributors: Dan Bolser or Emily Angiolini or Lucille Delisle or Mehmet Tekman or Michael Ball or Nicola Soranzo or Paul Yorke or Subina Mehta or Vicky Schneider
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slides
Galaxy Administrator Time Burden and Technology Usage
• beginnerGalaxy Server administration deploying maintenance survey -
hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Creating a new tutorial
• beginnerContributing to the Galaxy Training Material