Training materials
Contributors: Dan Bolser or Dr. Konstantinos Sidiropoulos or Elin Kronander or Frederik Coppens or Michael Ball or SIB Swiss Institute of Bioinformatics or Sabine Österle or Saskia Hiltemann or Vicky Schneider or bioinformatics.ca
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
sib-swiss/spatial-transcriptomics-training
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bioinformaticsdotca/BMB_2024
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bioinformaticsdotca/AMB_2024
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bioinformaticsdotca/IDE_2024
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bioinformaticsdotca/AUR_2023
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sib-swiss/reproducible-analysis-training