Training materials
Difficulty level: Beginner
and Contributors: Dan Bolser or Daniela Brites or Michael Ball or Mihaela Martis or Roland Krause or Sabine Österle or Stian Soiland-Reyes or Vicky Schneider
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Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
hands-on tutorial
Hands-on for 'Tree thinking for tuberculosis evolution and epidemiology' tutorial
• beginnerevolution prokaryote one-health phylogenetics -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR Standards Ontology SNOMED CT LOINC ATC CHOP ICD Interoperability -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data -
Carpentries style curriculum
Introduction to Workflows with Common Workflow Language
• beginnerWorkflows RNA-Seq analysis cwl commonwl sciworkflows workflows -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability -
Jupyter notebook
BioExcel Building Blocks (BioBB) Training Material
• beginnermolecular dynamics Docking Modeling life sciences -
Presentation
Data publishing and archival
• beginnerData publishing data archiving Data preserving
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