Training materials
Keywords: Exploratory-analysis or Proteins or Python or Variant analysis or covid19
and Contributors: Common Fund Data Ecosystem or Cristóbal Gallardo or Wolfgang Maier
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nih-cfde/training-and-engagement
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hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
Automating Galaxy workflows using the command line
• beginnerUsing Galaxy and Managing your Data covid19 variant-analysis workflows -
hands-on tutorial
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
slides
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• beginnerSequence assembly Assembly covid19