Training materials
Contributors: Coline Royaux or Emily Angiolini or Espen Mikal Robertsen or Joachim Wolff or Mehmet Tekman or Prof. Richard Baldock or Prof. Tom Freeman or Simon Bray or Vicky Schneider
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Visualize EBV cube data with Panoply netCDF viewer' tutorial
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hands-on tutorial
Contributing to BioBlend as a developer
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
• beginnerEpigenomics Epigenetics -
hands-on tutorial
DNA Methylation data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• beginnerEpigenomics ChIP-seq Epigenetics -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial