Training materials
Contributors: Christopher Barnett or Dr. Stephen David Laycock or Eija Korpelainen or Emily Angiolini or Erasmus+ Programme or Marek Vrbacky or Martin Krzywinski or Niclas Jareborg or Prof. Tom Freeman or Saskia Hiltemann or The Carpentries Lab
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
carpentries-lab/metagenomics-organization
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carpentries-lab/metagenomics-shell
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carpentries-lab/metagenomics-R
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carpentries-lab/metagenomics-workshop
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carpentries-lab/metagenomics-analysis