Training materials
Contributors: Chris Evelo or Data Carpentry or Hana Pergl Sustkova or Michael Krone or Munazah Andrabi or PhD BSc FSB or Prof. Tom Freeman or Ray Sajulga or Saskia Hiltemann or posit-conf-2023
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
posit-conf-2023/teach-ds-masterclass
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posit-conf-2023/managing-os-project
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posit-conf-2023/shiny-r-ui
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datacarpentry/rr-version-control
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posit-conf-2023/python-modeling