Training materials
Contributors: Chris Evelo or Daniel Blankenberg or Mateo Boudet or Mikko Rautiainen or Pavankumar Videm or Sundeep Agarwal or The Carpentries or rstudio::conf(2022)
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
rstudio-conf-2022/intro-to-tidyverse
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rstudio-conf-2022/build-tidy-tools
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rstudio-conf-2022/teach-ds
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rstudio-conf-2022/wtf-rstats
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rstudio-conf-2022/get-started-shiny