Training materials
Difficulty level: Beginner
and Contributors: Charlotte Soneson or Daniel Blankenberg or Frederick Carver or Jan Slifka or Martin Strauch or Martina Kutmon or Oliver Davis or PhD BSc FSB or The Gulbenkian Training Programme in Bioinforma... or Wendi Bacon
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Removing the effects of the cell cycle
• beginner10x Single Cell -
hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
hands-on tutorial
Text-mining with the SimText toolset
• beginnerStatistics and probability Statistics and machine learning interactive-tools -
hands-on tutorial
NGS data logistics
• beginnerIntroduction to Galaxy Analyses -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell
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