Training materials
Contributors: CRUK CI Bioinformatics Core or Emma Leith or Hadley Wickham or Pavankumar Videm or Roland Krause or Software Carpentry or The Carpentries Lab or Thomas Denecker
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
bioinformatics-core-shared-training/nextflow_september_2021
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bioinformatics-core-shared-training/Bulk_RNASeq_Course_Nov21
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bioinformatics-core-shared-training/r-basics
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carpentries-lab/metagenomics-organization
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carpentries-lab/metagenomics-shell
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bioinformatics-core-shared-training/SingleCell_RNASeq_Jan23