Training materials
Contributors: CRUK CI Bioinformatics Core or Dr. Roland Schwarz or Emily Angiolini or Marius van den Beek or Martin Krzywinski or Pavankumar Videm or Prof. Tom Freeman or Simon Gladman or Subina Mehta
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
bioinformatics-core-shared-training/nextflow_september_2021
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bioinformatics-core-shared-training/Bulk_RNASeq_Course_Nov21
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bioinformatics-core-shared-training/r-basics
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bioinformatics-core-shared-training/SingleCell_RNASeq_Jan23
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bioinformatics-core-shared-training/UnivCambridge_ScRnaSeq_Nov2021
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bioinformatics-core-shared-training/Bulk_RNASeq_Course_March23