Training materials
Scientific topics: Mass spectrometry-based metabolomics or Transcriptomics
and Contributors: Célia Michotey or Daniel Faria or David Bouyssié or Fotis E. Psomopoulos or Melanie Föll or Wendi Bacon
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hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Inferring single cell trajectories with Monocle3
• beginnerTranscriptomics 10x Single Cell paper-replication -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
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hands-on tutorial
Pre-processing of 10X Single-Cell RNA Datasets
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
Bulk RNA Deconvolution with MuSiC
• beginnerTranscriptomics Single Cell transcriptomics -
hands-on tutorial
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
hands-on tutorial
Mass spectrometry imaging: Finding differential analytes
•• intermediateMetabolomics -
hands-on tutorial
Mass spectrometry imaging: Examining the spatial distribution of analytes
• beginnerMetabolomics -
slides
Plates, Batches, and Barcodes
• beginnerTranscriptomics Single Cell