Training materials
Keywords: R or R-programming or ansible or data stewardship
and Contributors: Bruno Rodrigues or Colin Gillespie or Helena Rasche or University of Washington
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
jmacdon/Bioc2022Anno
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jmacdon/Bioc2020Anno
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b-rodrigues/rap4mads
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csgillespie/efficientR
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hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Setting up Celery Workers for Galaxy
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook