Training materials
and Contributors: Brane Leskosek or Dr. Simon Tomlinson or Emily Angiolini or Helena Rasche or Oliver Davis or Prof. Tom Freeman or Software Carpentry
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Monitoring Galaxy and Pulsar with Sentry
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Customizing the look of Galaxy
• beginnerGalaxy Server administration git-gat -
hands-on tutorial
Setting up Celery Workers for Galaxy
• beginnerGalaxy Server administration ansible git-gat -
hands-on tutorial
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial Resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
hands-on tutorial
Hands-on for 'Use Singularity containers for running Galaxy jobs' tutorial
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hands-on tutorial
Training Infrastructure as a Service (TIaaS)
• beginnerGalaxy Server administration ansible git-gat jobs training -
hands-on tutorial
Data Libraries
• beginnerGalaxy Server administration ansible git-gat storage -
hands-on tutorial
Reference Data with CVMFS
• beginnerGalaxy Server administration ansible git-gat
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