Training materials
Contributors: Brane Leskosek or Daniel Blankenberg or Data Carpentry or Emma Leith or Frederik Coppens or Mehmet Tekman
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hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
datacarpentry/rr-version-control
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datacarpentry/rr-literate-programming
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datacarpentry/rr-automation
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datacarpentry/cloud-genomics
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datacarpentry/organization-genomics
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datacarpentry/ecology-workshop