Training materials
Target audience: Students
and Contributors: Björn Grüning or Dr. Nils Gehlenborg or Lucille Delisle or Nate Coraor or Wolfgang Maier
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hands-on tutorial
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
hands-on tutorial
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
hands-on tutorial
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
hands-on tutorial
Somatic Variant Discovery from WES Data Using Control-FREEC
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Mapping and molecular identification of phenotype-causing mutations
• beginnerGenetic variation Variant Analysis