Training materials
Contributors: Björn Grüning or Data Carpentry or Dr. Alexander Lex or Eija Korpelainen or Elin Kronander or Jessica Lindvall or Manimozhiyan Arumugam or Marek Vrbacky or Saskia Hiltemann
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
datacarpentry/rr-version-control
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datacarpentry/rr-literate-programming
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ekorpela/cloud-vm-workshop
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datacarpentry/rr-automation
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datacarpentry/cloud-genomics