Training materials
Contributors: Björn Grüning or Daniel Sobral or Dr. Iain Milne or Fidel Ramirez or Gautier Sarah or Mehmet Tekman or Praveen Kumar or Ray Sajulga
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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slides
Galaxy from an administrator's point of view
• beginnerGalaxy Server administration -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
JavaScript plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy