Training materials
Difficulty level: Beginner or Intermediate
and Contributors: Björn Grüning or Celia van Gelder or Felix Almonte or Krzysztof Poterlowicz or Manimozhiyan Arumugam or Marek Vrbacky or Rafael C Jimenez or The Carpentries Lab
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hands-on tutorial
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
hands-on tutorial
Making clinical datasets FAIR
• beginnerFAIR Data, Workflows, and Research data stewardship fair open -
slides
Server Maintenance: Cleanup, Backup, and Restoration
• beginnerGalaxy Server administration -
slides
Galaxy from an administrator's point of view
• beginnerGalaxy Server administration -
hands-on tutorial
Somatic Variant Discovery from WES Data Using Control-FREEC
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
JavaScript plugins
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Galaxy Webhooks
• beginnerSoftware engineering Development in Galaxy