Training materials
Contributors: Björn Grüning or Celia van Gelder or Data Carpentry or Dr. Stephen David Laycock or Erasmus+ Programme or Jamie Edwards or Manimozhiyan Arumugam or Marek Vrbacky or Nils Peder Willassen or Pavankumar Videm or Sabine Österle or Wolfgang Maier
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
datacarpentry/rr-version-control
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datacarpentry/rr-literate-programming
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datacarpentry/rr-automation
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datacarpentry/cloud-genomics
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datacarpentry/organization-genomics