Training materials
Contributors: Bioinformatics, Rockefeller University or Dr. Sean I O’Donoghue or Michael Krone or Mr. Andy Yates or Mr. William Edward Hill or Niclas Jareborg or Nicola Soranzo or Pavankumar Videm or Prof. Tom Freeman or SIB Swiss Institute of Bioinformatics
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
sib-swiss/spatial-transcriptomics-training
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Training materials
ELITMa Module "Data Management Strategy" (Finland 28-29 June 2023)
• beginnerResearch Data Management RDM Strategy Training -
sib-swiss/reproducible-analysis-training
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sib-swiss/ena-seqdata-training
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sib-swiss/Introduction-FAIR-RDM-DMP
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RockefellerUniversity/RU_tidyverse_core