Training materials
Contributors: Biocore@CRG or Delphine Lariviere or Dr. Iain Milne or Dr. Ting Wang or Mehmet Tekman or SIB Swiss Institute of Bioinformatics or Software Carpentry or UC Davis Bioinformatics Core Training Page
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
sib-swiss/spatial-transcriptomics-training
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ucdavis-bioinformatics-training/2021-August-Iso-Seq
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ucdavis-bioinformatics-training/2021-May-Microbial-Community-Analysis
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ucdavis-bioinformatics-training/2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ
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ucdavis-bioinformatics-training/2023-September-Introduction-to-the-Command-Line-for-Bioinformatics
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ucdavis-bioinformatics-training/2023-July-Introduction-To-Python-For-Bioinformatics
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ucdavis-bioinformatics-training/2023-June-Introduction-to-R-for-Bioinformatics
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ucdavis-bioinformatics-training/2022-December-Spatial-Transcriptomics