Training materials
Contributors: Biocore@CRG or Collins Assisi or Eija Korpelainen or Gautier Sarah or Kaivan Kamali or Mikko Rautiainen or Pavankumar Videm or SIB Swiss Institute of Bioinformatics or Stéphanie Robin
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
sib-swiss/spatial-transcriptomics-training
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sib-swiss/reproducible-analysis-training
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sib-swiss/ena-seqdata-training
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biocorecrg/CRG_RIntroduction_2021
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sib-swiss/Introduction-FAIR-RDM-DMP
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biocorecrg/CRG_R_tidyverse_2021