Training materials
Contributors: Beatriz Serrano-Solano or Delphine Lariviere or Donny Vrins or Dr. Steve Jupe or Emily Angiolini or Melanie Foell or Nils Peder Willassen or Prof. Tom Freeman or Wendi Bacon or Yvan Le Bras
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
video
RDMbites | Decolonising data management in the biosciences
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video
RDMbites | Data management and disabilities
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video
RDMbites | EDIJ and decolonisation in data management
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video
RDMbites | EDIJ and decolonisation in data management: why should I care?
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hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Removing the effects of the cell cycle
• beginner10x Single Cell -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial