Training materials
Contributors: Beatriz Serrano-Solano or Ciara Loughrey or Enis Afgan or Erik Garrison or Fotis E. Psomopoulos or Janick Mathys or Mehmet Tekman or Wendi Bacon
-
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
video
RDMbites | Decolonising data management in the biosciences
-
video
RDMbites | Data management and disabilities
-
video
RDMbites | EDIJ and decolonisation in data management
-
video
RDMbites | EDIJ and decolonisation in data management: why should I care?
-
hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook