Training materials
Contributors: Bazante Sanders or Collins Assisi or Emily Angiolini or Erasmus+ Programme or Martin Strauch or Paul Yorke or Pavankumar Videm or Prof. Tom Freeman or Robert Andrews
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
video
RDMbites | Analysis Organisation
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video
RDMbites | RNAseq data submission: ArrayExpress
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video
RDMbites | Metadata: where to find published ontologies
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video
RDMbites | High-throughput sequencing data repositories
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video
RDMbites | Making code available in a repository