Training materials
Contributors: Bazante Sanders or Coline Royaux or Data Carpentry or Michael Parkin or Mikko Rautiainen or Sabine Österle or Saskia Hiltemann or Simon Gladman or Wolfgang Maier
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
datacarpentry/rr-version-control
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datacarpentry/rr-literate-programming
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datacarpentry/rr-automation
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datacarpentry/cloud-genomics
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datacarpentry/organization-genomics
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datacarpentry/ecology-workshop