Training materials
Contributors: Bazante Sanders or Björn Grüning or Dr. Iain Milne or Gildas Le Corguillé or John Chilton or Mehmet Tekman or Robert Andrews
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hands-on tutorial
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
video
RDMbites | Analysis Organisation
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video
RDMbites | RNAseq data submission: ArrayExpress
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video
RDMbites | Metadata: where to find published ontologies