Training materials
Contributors: Bazante Sanders or Beatriz Serrano-Solano or Espen Mikal Robertsen or Marius van den Beek or Michael Krone or Olivier Inizan or Pavel Dvorak or Prof. Tom Freeman or Sergio Martínez Cuesta or Simon Bray
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
semacu/20180223_ORCID_Chemistry_Cambridge
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semacu/20180531_DataVisualisationRggplot2_Wolfson_Cambridge
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semacu/20180726_TrainMalta_Unix_R
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semacu/20190927_IntroductionGithub_HDRUK
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semacu/20171024_GitHub_Chemistry_Cambridge
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semacu/20181003_Intro_git_GitHub
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hands-on tutorial
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
hands-on tutorial
Teaching Python
• beginnerContributing to the Galaxy Training Material -
hands-on tutorial
Python - Type annotations
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook