Training materials
Contributors: Bazante Sanders or Beatriz Serrano-Solano or Dr. Iain Milne or Dr. Simon Li or The Carpentries or UC Davis Bioinformatics Core Training Page or Yvan Le Bras
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hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
ucdavis-bioinformatics-training/2021-August-Iso-Seq
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ucdavis-bioinformatics-training/2021-May-Microbial-Community-Analysis
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ucdavis-bioinformatics-training/2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ
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ucdavis-bioinformatics-training/2023-September-Introduction-to-the-Command-Line-for-Bioinformatics
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ucdavis-bioinformatics-training/2023-July-Introduction-To-Python-For-Bioinformatics
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ucdavis-bioinformatics-training/2023-June-Introduction-to-R-for-Bioinformatics
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ucdavis-bioinformatics-training/2022-December-Spatial-Transcriptomics
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ucdavis-bioinformatics-training/2022-July-Advanced-Topics-in-Single-Cell-RNA-Seq-ATAC