Training materials
Contributors: Bazante Sanders or Beatriz Alfaro Serrano, BNN or Data Carpentry or Derek Wright or James Johnson or Marius van den Beek or Martin Čech or Mehmet Tekman
-
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
datacarpentry/rr-version-control
-
datacarpentry/rr-literate-programming
-
datacarpentry/rr-automation
-
datacarpentry/cloud-genomics
-
datacarpentry/organization-genomics
-
datacarpentry/ecology-workshop
-
datacarpentry/genomics-r-intro