Training materials
Difficulty level: Beginner or Not specified
and Contributors: Barbara Kozlikova or Beatriz Serrano-Solano or Hana Pergl Sustkova or Institut Français de Bioinformatique (IFB) or Mehmet Tekman or Melanie Foell or Michael Krone or Prof. Tom Freeman or Robert Andrews
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
IFB-ElixirFr/IFB-FAIR-data-training
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IFB-ElixirFr/IFB_Shiny_training
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IFB-ElixirFr/EBAII
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IFB-ElixirFr/IFB-FAIR-bioinfo-training
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video
RDMbites | Analysis Organisation
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video
RDMbites | RNAseq data submission: ArrayExpress
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video
RDMbites | Metadata: where to find published ontologies
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video
RDMbites | High-throughput sequencing data repositories