Training materials
Scientific topics: Software engineering or Somatic mutations or Transcriptomics
and Contributors: Bérénice Batut or Dr. Konstantinos Sidiropoulos or Mateusz Kuzak or Michael Ball or Mr. William Edward Hill or Vicky Schneider
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hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Data source integration
• beginnerSoftware engineering Development in Galaxy -
hands-on tutorial
Pre-processing of Single-Cell RNA Data
• beginnerTranscriptomics Single Cell -
hands-on tutorial
CLIP-Seq data analysis from pre-processing to motif detection
• beginnerTranscriptomics -
hands-on tutorial
Clustering 3K PBMCs with Scanpy
• beginnerTranscriptomics 10x Single Cell -
hands-on tutorial
RNA Seq Counts to Viz in R
• beginnerTranscriptomics interactive-tools -
hands-on tutorial
Advanced R in Galaxy
•• intermediateSoftware engineering Foundations of Data Science R -
hands-on tutorial
R basics in Galaxy
• beginnerSoftware engineering Foundations of Data Science R interactive-tools -
slides
Tool Shed: sharing Galaxy tools
• beginnerSoftware engineering Development in Galaxy
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