Training materials
Contributors: Bérénice Batut or Christophe Antoniewski or Emily Angiolini or Felix Almonte or John Davis or Maria Doyle or Matthias Fahrner or Mehmet Tekman or Prof. Tom Freeman or Susan Coort
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
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hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
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hands-on tutorial
Teaching experiences
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Live Coding is a Skill
• beginnerTeaching and Hosting Galaxy training -
hands-on tutorial
Upload data to Galaxy
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Hands-on for 'Essential genes detection with Transposon insertion sequencing' tutorial