Training materials
Difficulty level: Intermediate
and Contributors: Bérénice Batut or Christoph Stritt or Dr. Roland Schwarz or Janick Mathys or Paulette Lieby or Sabine Österle
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hands-on tutorial
Hands-on for 'Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data' tutorial
•• intermediatevariant-analysis covid19 virology one-health -
hands-on tutorial
Hands-on for 'Identifying tuberculosis transmission links: from SNPs to transmission clusters' tutorial
•• intermediateevolution prokaryote one-health -
hands-on tutorial
Hands-on for 'Advanced R in Galaxy' tutorial
•• intermediatedata-science R -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Bioinformatics Summer School 2019
•• intermediateProteomics RNA-Seq Omics Statistics and probability Data handling