Training materials
Difficulty level: Intermediate
and Contributors: Avans Hogeschool or Dr. Scooter Morris or Helena Rasche or Janick Mathys or Kenneth Hoste or Munazah Andrabi
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hands-on tutorial
FAIR data management solutions
•• intermediateFAIR Data management -
hands-on tutorial
Sequence data submission to ENA
•• intermediateFAIR ENA sequence datasets -
hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
hands-on tutorial
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
•• intermediateMetabolomics -
Video
RDMbites: Image data
•• intermediateimaging data management -
Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
hands-on tutorial
Hands-on for 'Refining Genome Annotations with Apollo (prokaryotes)' tutorial
•• intermediategenome-annotation prokaryote -
hands-on tutorial
Hands-on for 'Python - Subprocess' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'CLI Educational Game - Bashcrawl' tutorial
•• intermediatedata-science game bash jupyter-notebook
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