Training materials
Contributors: Armin Fuchs or Bérénice Batut or Collins Assisi or Delphine Lariviere or Mehmet Tekman or Nicola Soranzo or Ray Sajulga or Robert Andrews or Wolmar Nyberg Åkerström
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hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
video
RDMbites | Analysis Organisation
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video
RDMbites | RNAseq data submission: ArrayExpress
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video
RDMbites | Metadata: where to find published ontologies
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video
RDMbites | High-throughput sequencing data repositories
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video
RDMbites | Making code available in a repository
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video
RDMbites | Package and environment management systems
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video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
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video
RDMbites | RNAseq data submission: metadata