Training materials
Target audience: Students
and Contributors: Armando Arredondo Soto or Bioinformatics, Rockefeller University or Björn Grüning or Lucille Delisle or Praveen Kumar or Torsten Seemann or Youri Hoogstrate
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
CUT&RUN data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
Exome sequencing data analysis for diagnosing a genetic disease
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
Genome annotation with Prokka
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
hands-on tutorial
ATAC-Seq data analysis
• beginnerEpigenomics Epigenetics -
hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Label-free versus Labelled - How to Choose Your Quantitation Method
• beginnerProteomics DDA -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics