Training materials
Contributors: Aravind Venkatesan or Bioinformatics, Rockefeller University or Branka Franicevic or Collins Assisi or Dr. Bernard de Bono or Munazah Andrabi or Saskia Hiltemann or Yvonne Kallberg
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
RockefellerUniversity/RU_tidyverse_core
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RockefellerUniversity/RU_reproducibleR
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RockefellerUniversity/IGV_course
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RockefellerUniversity/RU_GenomicVariants
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RockefellerUniversity/RU_VisualizingGenomicsData