Training materials
Difficulty level: Beginner
and Contributors: Aravind Venkatesan or Avans Hogeschool or Blaise Li or Dr. Nils Gehlenborg or Erwan Corre or Fotis E. Psomopoulos
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'CLI basics' tutorial
• beginnerdata-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Advanced SQL' tutorial
• beginnerdata-science SQL jupyter-notebook -
hands-on tutorial
Hands-on for 'Introduction to SQL' tutorial
• beginnerdata-science SQL jupyter-notebook -
hands-on tutorial
Hands-on for 'Introduction to Python' tutorial
• beginnerdata-science jupyter-notebook -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
hands-on tutorial
Quality Control
• beginnerSequence analysis -
Initiation to R programming and descriptive statistics
• beginnerR-programming Descriptive statistics Statistics Bioinformatics