Training materials
Contributors: Anup Kumar or Barbara Kozlikova or Bazante Sanders or Eija Korpelainen or Simon Bray or Wendi Bacon
-
hands-on tutorial
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Scanpy Parameter Iterator
• beginnerSingle Cell -
video
RDMbites | Decolonising data management in the biosciences
-
video
RDMbites | Data management and disabilities
-
video
RDMbites | EDIJ and decolonisation in data management
-
video
RDMbites | EDIJ and decolonisation in data management: why should I care?
-
ekorpela/cloud-vm-workshop
-
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook