Training materials
Contributors: Anton Nekrutenko or Dr. Steve Jupe or Emily Angiolini or Erasmus+ Programme or Florian Christoph Sigloch or Ph.D. or Prof. Tom Freeman or Software Carpentry
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swcarpentry/matlab-novice-inflammation
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swcarpentry/make-novice
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swcarpentry/r-novice-gapminder
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swcarpentry/python-novice-inflammation
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swcarpentry/shell-novice
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swcarpentry/git-novice
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hands-on tutorial
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Genome Annotation annotation cookbook eukaryote evolution microgalaxy prokaryote vgp -
hands-on tutorial
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
hands-on tutorial
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
hands-on tutorial
Calling very rare variants
• beginnerGenetic variation Variant Analysis