Training materials
Difficulty level: Beginner
and Contributors: Anton Nekrutenko or Delphine Lariviere or Frederik Coppens or Michael Krone or Pip Griffin or Prof. Tom Freeman or Stian Soiland-Reyes or Stéphanie Robin
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slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Calling very rare variants
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Calling variants in diploid systems
• beginnerGenetic variation Variant Analysis -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'Unicycler Assembly' tutorial
• beginnerassembly prokaryote -
hands-on tutorial
Reference-based RNAseq data analysis (long)
• beginnerTranscriptomics -
hands-on tutorial
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
Searching Your History
• beginnerUsing Galaxy and Managing your Data -
hands-on tutorial
NGS data logistics
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses
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